UK Ontology Network
The UK Ontology Network is an informal and voluntary coordination between people based in the United Kingdom and working in the area of ontology and ontology related technology. Members of the network include people from all areas of science and industry and across all disciplines.
Our mission is
- to improve cooperation between the members of UK organizations engaged in ontology activites
- to encourage collaboration between those presently working in, and those potentially interested in, ontology development, research and application of ontologies within the UK
- to expose the work of those based in the UK working in ontology and give the community better visibility on a world stage
How to join
If you have any interest in ontologies and are based in the UK or wish to collaborate or communicate with those in the UK ontology community, we would encourage you to join the Google Group mailing list at the following link:
http://groups.google.com/group/ontology-uk/subscribe
Note: this mailing list does not exlcude those based outside the UK, however, the primary purpose of this group is in connecting the across the UK ontology community.
Contact the UKON
If you have a question or comment you'd like to post to the UK Ontology Network we would encourage you to contact the Google Group mailing list as a means of communicating with all members. Please email ontology-uk@googlegroups.com
Contact the local organisers (UKON 2018)
If you have any other issues, such as administrative questions please contact Dr Goksel Misirli and Dr Allison Gardner.
The programme
| 9:30- | 9:40 | WELCOME and INTRODUCTION |
SESSION I |
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| Chaired by Dr Jennifer Warrender | ||
| 9:40- | 10:30 | Talks |
| M. Arguello Casteleiro (Manchester), D. Maseda-Fernandez (NHS), J. Des-Diz (Hospital do Salnes), C. Wroe (BMJ), M.J. Fernandez-Prieto (Salford), G. Demetriou (Manchester), J. Keane (Manchester), G. Nenadic (Manchester) and R. Stevens (Manchester) Organising Results of Deep Learning from PubMed using the Clinical Evidence-Based Ontology (CEBO) |
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| Ed de Quincey (Keele) Using Card Sorting to Design Faceted Navigation Structures |
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| Peter Murray-Rust, Charles Matthews and Thomas Arrow (ContentMine) WikiFactMine |
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| Nor Diana Ahmad, Eric Atwell and Brandon Bennett (Leeds) A Malay Translated Qur’an Ontology using Indexing Approach for Information Retrieval |
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| Samiul Hasan (GlaxoSmithKline) Towards Models of Prospective Curation in the Drug Research Industry |
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| 10:30- | 11:00 | Posters and demos |
| 11:00- | 11:30 | Coffee break |
SESSION II |
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| Chaired by Dr Allison Gardner | ||
| 11:30- | 12:00 | Ivana Bartoletti |
| 12:00- | 12:30 | Talks |
| Phillip Lord (Newcastle) Gender: Its about more than just gonads. |
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| Christian Atallah (Newcastle), James McLaughlin (Newcastle), James Skelton (Newcastle), Goksel Misirli (Keele) and Anil Wipat (Newcastle) SyBiOnt: The Synthetic Biology Ontology |
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| Goksel Misirli (Keele), Angel Goni-Moreno (Newcastle), James McLaughlin (Newcastle), Anil Wipat (Newcastle) and Phillip Lord (Newcastle) SBOL-OWL: The Synthetic Biology Open Language Ontology |
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| 12:30- | 13:30 | Lunch |
SESSION III |
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| Chaired by Dr James Malone | ||
| 13:30- | 14:30 | Talks |
| Marzieh Talebpour, Thomas Jackson and Martin Sykora (Loughborough) A Community-based Framework for Ontology Evaluation |
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| Allyson Lister, Peter Mcquilton, Alejandra Gonzalez-Beltran, Philippe Rocca-Serra, Milo Thurston, Massimiliano Izzo and Susanna-Assunta Sansone (Oxford) Towards a harmonised subject and domain annotation of FAIRsharing standards, databases and policies |
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| Nicolas Matentzoglu (EMBL-EBI), James Malone (SciBite), Christopher Mungall (The Lawrence Berkeley National Laboratory) and Robert Stevens (Manchester) Guidelines for the Minimum Information for the Reporting of an Ontology (MIRO) |
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| Phillip Lord (Newcastle) Tawny-OWL: A Richer Ontology Development Environment |
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| Simon Jupp (EBI), James Overton (Knocean), Helen Parkinson (EBI) and Christopher Mungall (The Lawrence Berkeley National Laboratory) Automating ontology releases with ROBOT |
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| Alasdair Gray (Heriot-Watt) and The Bioschemas Community (Bioschemas) Bioschemas Community: Developing profiles over Schema.org to make life sciences resources more findable |
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| 14:30- | 15:00 | Coffee break |
SESSION IV |
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| Chaired by Dr Goksel Misirli | ||
| 15:00- | 15:40 | Talks |
| Yuri Sato (Brighton), Gem Stapleton (Brighton), Mateja Jamnik (Cambridge) and Zohreh Shams (Cambridge) Distinct effects of ontology visualizations in entailment and consistency checking | ||
| Aisha Blfgeh and Phillip Lord (Newcastle) Users and Document-centric workflow for ontology development |
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| Melanie Courtot (EBI) - on behalf of The Global Alliance For Genomics And Health Data Use Workstream DUO: the Data Use Ontology for compliant secondary use of human genomics data |
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| Peter Winstanley (The Scottish Government) and Alejandra Gonzalez-Beltran(Oxford) W3C Data Exchange Working Group - an update |
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| 15:40- | 16:10 | Panel - Led by Dr Phillip Lord and Professor Robert Stevens |
| 16:10- | 16:20 | Closing remarks |
Posters
Allyson Lister, Peter Mcquilton, Alejandra Gonzalez-Beltran, Philippe Rocca-Serra, Milo Thurston, Massimiliano Izzo and Susanna-Assunta Sansone (Oxford)
Towards a harmonised subject and domain annotation of FAIRsharing standards, databases and policies
Marzieh Talebpour, Thomas Jackson and Martin Sykora (Loughborough)
A Community-based Framework for Ontology Evaluation
Nor Diana Ahmad, Eric Atwell and Brandon Bennett (Leeds)
A Malay Translated Qur’an Ontology using Indexing Approach for Information Retrieval
Alasdair Gray (Heriot-Watt) and The Bioschemas Community (Bioschemas)
Bioschemas Community: Developing profiles over Schema.org to make life sciences resources more findable
Xue Li (Edinburgh), Alan Bundy (Edinburgh), Alan Smaill (Edinburgh) and Ewen Maclean (Aesthetic Integration Ltd)
Repairing Datalog-like logical theories by combining abduction, reformation and belief revision
Leyla Jael García Castro (EBI) and The Bioschemas Community (Bioschemas)
Bioschemas, where schema.org meets Life Sciences
Tejal Shah, Nick Booth and Paul Burton (Newcastle)
Exploring the use of Semantic Web technologies for clinical trial recruitment process
Juan Casanova and Alan Bundy (Edinburgh)
Meta-ontology fault detection
Nizal Alshammry and Phillip Lord (Newcastle)
Hypernormalising the Gene Ontology
Mohammad K. Halawani, Phillip Lord and Rob Forsyth (Newcastle)
Retrieval of Full-Text Literature to Bootstrap Biomedical Ontologies
Nicolas Matentzoglu and David Osumi-Sutherland (EMBL-EBI)
Reconciling formal definitions across species-specific phenotype ontologies
Demos
Phillip Lord (Newcastle)
Tawny-OWL: A Richer Ontology Development Environment
Aisha Blfgeh and Phillip Lord (Newcastle)
Users and Document-centric workflow for ontology development
Peter Murray-Rust, Charles Matthews and Thomas Arrow (ContentMine)
WikiFactMine
Nicolas Matentzoglu and David Osumi-Sutherland (EMBL-EBI)
Reconciling formal definitions across species-specific phenotype ontologies
Keele Hall - The Salvin Room
Keele University
Keele
Staffordshire
ST5 5BG
Travel
Please click here for information on travelling to Keele.